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Y43F8C.6 Chromatin complexes subunit BAP18;SANT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 180285, updated on 2-Nov-2024

Summary

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Official Symbol
Y43F8C.6
Official Full Name
Chromatin complexes subunit BAP18;SANT domain-containing protein
Primary source
WormBase:WBGene00012828
Locus tag
CELE_Y43F8C.6
See related
AllianceGenome:WB:WBGene00012828
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of MLL1 complex and NURF complex. Orthologous to human C17orf49 (chromosome 17 open reading frame 49). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y43F8C.6 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (19633040..19640908, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Fas-binding factor 1 C-terminal domain-containing protein Neighboring gene tRNA Neighboring gene SCP domain-containing protein Neighboring gene ER membrane protein complex subunit 10 Neighboring gene ncRNA Neighboring gene Mitochondrial Ribosomal Protein, Small

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ITSN-1 controls vesicle recycling at the neuromuscular junction and functions in parallel with DAB-1. Wang W, et al. Traffic, 2008 May. PMID 18298590, Free PMC Article
  2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
  3. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of MLL1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of NURF complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Chromatin complexes subunit BAP18;SANT domain-containing protein
NP_001256880.1
  • Confirmed by transcript evidence
NP_001256881.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    19633040..19640908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269951.2 → NP_001256880.1  SANT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256880.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWN1

  2. NM_001269952.5 → NP_001256881.1  Chromatin complexes subunit BAP18 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256881.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H8ESF1
Nucleotide Protein
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