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clec-42 Deleted in malignant brain tumors 1 protein-like [ Caenorhabditis elegans ]

Gene ID: 180189, updated on 2-Nov-2024

Summary

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Official Symbol
clec-42
Official Full Name
Deleted in malignant brain tumors 1 protein-like
Primary source
WormBase:WBGene00008891
Locus tag
CELE_F16H6.1
See related
AllianceGenome:WB:WBGene00008891
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in int1DL; int1DR; int1VL; int1VR; and neurons. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See clec-42 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (18191412..18194168)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA Neighboring gene C-type lectin domain-containing protein Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA Neighboring gene DRBM domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Effector and regulator: Diverse functions of C. elegans C-type lectin-like domain proteins. Pees B, et al. PLoS Pathog, 2021 Apr. PMID 33793670, Free PMC Article
  2. Genome-wide analysis of sex-enriched gene expression during C. elegans larval development. Thoemke K, et al. Dev Biol, 2005 Aug 15. PMID 15987632
  3. The transcriptional coactivator CBP/p300 is an evolutionarily conserved node that promotes longevity in response to mitochondrial stress. Li TY, et al. Nat Aging, 2021 Feb. PMID 33718883, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
Deleted in malignant brain tumors 1 protein-like
NP_507557.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    18191412..18194168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075156.4 → NP_507557.1  Deleted in malignant brain tumors 1 protein-like [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507557.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XV91
    Conserved Domains (3) summary
    smart00034
    Location:170 → 289
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00042
    Location:450 → 550
    CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
    cd00041
    Location:307 → 399
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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