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F23B12.4 Reelin domain-containing protein;ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179944, updated on 9-Dec-2024

Summary

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Official Symbol
F23B12.4
Official Full Name
Reelin domain-containing protein;ShKT domain-containing protein
Primary source
WormBase:WBGene00009081
Locus tag
CELE_F23B12.4
See related
AllianceGenome:WB:WBGene00009081
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See F23B12.4 in Genome Data Viewer
Location:
chromosome: V
Exon count:
10
Sequence:
Chromosome: V; NC_003283.11 (14441141..14445349)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Programmed cell death activator egl-1 Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial Neighboring gene Protein farnesyltransferase subunit beta Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. β-Integrin de-phosphorylation by the Density-Enhanced Phosphatase DEP-1 attenuates EGFR signaling in C. elegans. Walser M, et al. PLoS Genet, 2017 Jan. PMID 28135265, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Reelin domain-containing protein;ShKT domain-containing protein
NP_001122926.2
  • Confirmed by transcript evidence
NP_001122927.1
  • Confirmed by transcript evidence
NP_001359754.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    14441141..14445349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001373159.4 → NP_001359754.1  Reelin domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1B6T5
    Conserved Domains (1) summary
    cd08544
    Location:40 → 169
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins

  2. NM_001129454.3 → NP_001122926.2  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122926.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8WHS3
    Conserved Domains (2) summary
    cd08544
    Location:40 → 169
    Reeler; Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam01549
    Location:330 → 367
    ShK; ShK domain-like

  3. NM_001129455.3 → NP_001122927.1  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122927.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19751
    Conserved Domains (1) summary
    pfam01549
    Location:97 → 134
    ShK; ShK domain-like
Nucleotide Protein
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