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F53F4.11 Ribosomal L1 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179849, updated on 9-Dec-2024

Summary

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Official Symbol
F53F4.11
Official Full Name
Ribosomal L1 domain-containing protein
Primary source
WormBase:WBGene00009993
Locus tag
CELE_F53F4.11
See related
AllianceGenome:WB:WBGene00009993
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human RSL1D1 (ribosomal L1 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See F53F4.11 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (13622107..13624524, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein;Serpentine Receptor, class D (delta) Neighboring gene Neuropeptide-Like Protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene putative NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial Neighboring gene Thioredoxin domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. Kolundzic E, et al. Dev Cell, 2018 Sep 10. PMID 30078731, Free PMC Article
  2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Ribosomal L1 domain-containing protein
NP_506375.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13622107..13624524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073974.6 → NP_506375.1  Ribosomal L1 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506375.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20720
    Conserved Domains (2) summary
    pfam00687
    Location:180 → 411
    Ribosomal_L1; Ribosomal protein L1p/L10e family
    pfam11081
    Location:17 → 98
    DUF2890; Protein of unknown function (DUF2890)
Nucleotide Protein
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