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ccch-3 C3H1-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179733, updated on 4-Jan-2025

Summary

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Official Symbol
ccch-3
Official Full Name
C3H1-type domain-containing protein
Primary source
WormBase:WBGene00012277
Locus tag
CELE_W05B10.2
See related
AllianceGenome:WB:WBGene00012277
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Is expressed in dorsal nerve cord; head muscle; head neurons; intestine; and ventral nerve cord. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See ccch-3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (12658669..12659489, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene Guanine nucleotide-binding protein alpha-9 subunit Neighboring gene Protein lin-25 Neighboring gene M247R Neighboring gene Histone H3.3-like type 2 Neighboring gene Saposin B-type domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
C3H1-type domain-containing protein
NP_001369947.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12658669..12659489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383424.2 → NP_001369947.1  C3H1-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23170
    Conserved Domains (1) summary
    pfam18044
    Location:138 → 158
    zf-CCCH_4; CCCH-type zinc finger
Nucleotide Protein
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