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cdr-6 CaDmium Responsive [ Caenorhabditis elegans ]

Gene ID: 179703, updated on 4-Jan-2025

Summary

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Official Symbol
cdr-6
Official Full Name
CaDmium Responsive
Primary source
WormBase:WBGene00010471
Locus tag
CELE_K01D12.12
See related
AllianceGenome:WB:WBGene00010471
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in cytoplasm. Is expressed in intestine; pharynx; and rectal gland cell. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See cdr-6 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (12412487..12413701, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene GST C-terminal domain-containing protein Neighboring gene CaDmium Responsive Neighboring gene CaDmium Responsive Neighboring gene CaDmium Responsive

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The cadmium-responsive gene, cdr-6, does not influence Caenorhabditis elegans responses to exogenous zinc. Evans KS, et al. MicroPubl Biol, 2020 Sep 14. PMID 33005884, Free PMC Article
  2. Molecular characterization of two homologs of the Caenorhabditis elegans cadmium-responsive gene cdr-1: cdr-4 and cdr-6. Dong J, et al. J Mol Biol, 2008 Feb 22. PMID 18177893, Free PMC Article
  3. Identification and characterization of a family of Caenorhabditis elegans genes that is homologous to the cadmium-responsive gene cdr-1. Dong J, et al. Biochim Biophys Acta, 2005 Jan 21. PMID 15652154
  4. Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences. Zhang X, et al. PLoS Genet, 2021 Jun. PMID 34166401, Free PMC Article
  5. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CaDmium Responsive
NP_506113.1
  • Product from WormBase gene class cdr;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12412487..12413701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073712.7 → NP_506113.1  CaDmium Responsive [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506113.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EET3
    Conserved Domains (2) summary
    cd03193
    Location:200 → 267
    GST_C_Metaxin; C-terminal, alpha helical domain of Metaxin and related proteins
    cd03080
    Location:46 → 118
    GST_N_Metaxin_like; GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It ...
Nucleotide Protein
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