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T04F3.1 1-aminocyclopropane-1-carboxylate synthase [ Caenorhabditis elegans ]

Gene ID: 179608, updated on 9-Dec-2024

Summary

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Official Symbol
T04F3.1
Official Full Name
1-aminocyclopropane-1-carboxylate synthase
Primary source
WormBase:WBGene00011436
Locus tag
CELE_T04F3.1
See related
AllianceGenome:WB:WBGene00011436
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable transaminase activity. Predicted to be involved in amino acid metabolic process. Orthologous to human ACCS (1-aminocyclopropane-1-carboxylate synthase homolog (inactive)) and ACCSL (1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See T04F3.1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
17
Sequence:
Chromosome: V; NC_003283.11 (11740065..11754111)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables transaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in 1-aminocyclopropane-1-carboxylate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in amino acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
1-aminocyclopropane-1-carboxylate synthase
NP_001256363.1
  • Confirmed by transcript evidence
NP_001256364.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    11740065..11754111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269434.4 → NP_001256363.1  1-aminocyclopropane-1-carboxylate synthase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256363.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EE32
    Conserved Domains (3) summary
    cd00609
    Location:3076 → 3444
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    PTZ00121
    Location:1134 → 1515
    PTZ00121; MAEBL; Provisional
    pfam02463
    Location:1346 → 2197
    SMC_N; RecF/RecN/SMC N terminal domain

  2. NM_001269435.3 → NP_001256364.1  1-aminocyclopropane-1-carboxylate synthase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256364.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EGD0
    Conserved Domains (3) summary
    cd00609
    Location:3009 → 3377
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    PTZ00121
    Location:1067 → 1448
    PTZ00121; MAEBL; Provisional
    pfam02463
    Location:1279 → 2130
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
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