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B0024.4 CUB_2 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179432, updated on 4-Jan-2025

Summary

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Official Symbol
B0024.4
Official Full Name
CUB_2 domain-containing protein
Primary source
WormBase:WBGene00007097
Locus tag
CELE_B0024.4
See related
AllianceGenome:WB:WBGene00007097
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in defense response to Gram-negative bacterium. Located in membrane raft. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See B0024.4 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (10297399..10298985)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene Crescerin-like protein che-12 Neighboring gene ncRNA Neighboring gene Receptor-type guanylate cyclase gcy-6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic analysis of immune response against Vibrio cholerae hemolysin in Caenorhabditis elegans. Sahu SN, et al. PLoS One, 2012. PMID 22675448, Free PMC Article
  2. An analysis of the Caenorhabditis elegans lipid raft proteome using geLC-MS/MS. Rao W, et al. J Proteomics, 2011 Feb 1. PMID 21070894
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft HDA PubMed 

General protein information

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Preferred Names
CUB_2 domain-containing protein
NP_505648.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    10297399..10298985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073247.4 → NP_505648.1  CUB_2 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505648.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q17420
    Conserved Domains (1) summary
    pfam03409
    Location:36 → 370
    Glycoprotein; Transmembrane glycoprotein
Nucleotide Protein
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