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ztf-7 Zinc finger protein ztf-7 [ Caenorhabditis elegans ]

Gene ID: 179375, updated on 4-Jan-2025

Summary

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Official Symbol
ztf-7
Official Full Name
Zinc finger protein ztf-7
Primary source
WormBase:WBGene00009772
Locus tag
CELE_F46B6.7
See related
AllianceGenome:WB:WBGene00009772
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including anal region; body wall musculature; digestive tract; nerve ring; and reproductive system. Orthologous to human ZNF277 (zinc finger protein 277). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See ztf-7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (9786993..9789707, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene LisH domain-containing protein Neighboring gene Tr-type G domain-containing protein Neighboring gene ncRNA Neighboring gene Lipase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. Jovanovic M, et al. Nat Methods, 2010 Oct. PMID 20835247, Free PMC Article
  2. A ZTF-7/RPS-2 complex mediates the cold-warm response in C. elegans. Xu T, et al. PLoS Genet, 2023 Feb. PMID 36763670, Free PMC Article
  3. A novel biochemical method to identify target genes of individual microRNAs: identification of a new Caenorhabditis elegans let-7 target. Andachi Y. RNA, 2008 Nov. PMID 18824511, Free PMC Article
  4. Functional identification of microRNA-centered complexes in C. elegans. Hebbar S, et al. Sci Rep, 2022 May 3. PMID 35504914, Free PMC Article
  5. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A ZTF-7/RPS-2 complex mediates the cold-warm response in C. elegans.
    Title: A ZTF-7/RPS-2 complex mediates the cold-warm response in C. elegans.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Zinc finger protein ztf-7
NP_505526.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9786993..9789707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073125.7 → NP_505526.1  Zinc finger protein ztf-7 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505526.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q20448
    Conserved Domains (3) summary
    PTZ00108
    Location:1 → 152
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00020
    Location:358 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:307 → 394
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q20448.1

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