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ZK287.7 RNA_ligase domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179359, updated on 2-Nov-2024

Summary

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Official Symbol
ZK287.7
Official Full Name
RNA_ligase domain-containing protein
Primary source
WormBase:WBGene00013967
Locus tag
CELE_ZK287.7
See related
AllianceGenome:WB:WBGene00013967
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity and pseudouridine synthase activity. Predicted to be involved in pseudouridine synthesis. Orthologous to human RPUSD3 (RNA pseudouridine synthase D3) and RPUSD4 (RNA pseudouridine synthase D4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ZK287.7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (9693062..9694785)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene ncRNA Neighboring gene Protein her-1 Neighboring gene Protein lifeguard 1-like Neighboring gene Transmembrane BAX inhibitor motif-containing protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA_ligase domain-containing protein
NP_505498.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9693062..9694785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073097.6 → NP_505498.1  RNA_ligase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505498.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23459
    Conserved Domains (1) summary
    cl00130
    Location:177 → 282
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
Nucleotide Protein
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