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gfi-1 ET module [ Caenorhabditis elegans ]

Gene ID: 179022, updated on 2-Nov-2024

Summary

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Official Symbol
gfi-1
Official Full Name
ET module
Primary source
WormBase:WBGene00001581
Locus tag
CELE_F57F4.3
See related
AllianceGenome:WB:WBGene00001581
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in chromatin remodeling. Located in membrane raft. Is expressed in I1L; I1R; RIH; and intestine. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gfi-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (6392537..6399931, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Filaggrin-2-like Neighboring gene HotDog ACOT-type domain-containing protein Neighboring gene bacterial colonization factor Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of GPI-anchored proteins involved in germline stem cell proliferation in the Caenorhabditis elegans germline stem cell niche. Rikitake M, et al. J Biochem, 2020 Dec 26. PMID 32844210
  2. Galectin LEC-6 interacts with glycoprotein F57F4.4 to cooperatively regulate the growth of Caenorhabditis elegans. Takeuchi T, et al. Biol Pharm Bull, 2011. PMID 21720028
  3. A regulated response to impaired respiration slows behavioral rates and increases lifespan in Caenorhabditis elegans. Cristina D, et al. PLoS Genet, 2009 Apr. PMID 19360127, Free PMC Article
  4. Caenorhabditis elegans galectins LEC-6 and LEC-10 interact with similar glycoconjugates in the intestine. Maduzia LL, et al. J Biol Chem, 2011 Feb 11. PMID 21115491, Free PMC Article
  5. Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. Cui M, et al. PLoS Genet, 2006 May. PMID 16710447, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in chromatin remodeling IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft HDA PubMed 

General protein information

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Preferred Names
ET module
NP_504626.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    6392537..6399931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072225.6 → NP_504626.1  ET module [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504626.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q94246
    Conserved Domains (1) summary
    pfam01684
    Location:1401 → 1480
    ET; ET module
Nucleotide Protein
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