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C27D8.3 Integrase catalytic domain-containing protein;RING-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178224, updated on 2-Nov-2024

Summary

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Official Symbol
C27D8.3
Official Full Name
Integrase catalytic domain-containing protein;RING-type domain-containing protein
Primary source
WormBase:WBGene00007779
Locus tag
CELE_C27D8.3
See related
AllianceGenome:WB:WBGene00007779
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription and signal transduction. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C27D8.3 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
10
Sequence:
Chromosome: IV; NC_003282.8 (12706700..12711744, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene PRotein arginine MethylTransferase Neighboring gene C3H1-type domain-containing protein;Coiled-coil domain-containing protein Neighboring gene ncRNA Neighboring gene NAD-dependent epimerase/dehydratase domain-containing protein Neighboring gene BACK domain-containing protein Neighboring gene Protein kinase domain-containing protein Neighboring gene Intrinsically Disordered Protein, expressed in Pharynx

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Integrase catalytic domain-containing protein;RING-type domain-containing protein
NP_001040914.2
  • Confirmed by transcript evidence
NP_001040915.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    12706700..12711744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047449.6 → NP_001040914.2  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040914.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93290
    Conserved Domains (1) summary
    cl15255
    Location:468 → 562
    SH2; Src homology 2 (SH2) domain

  2. NM_001047450.4 → NP_001040915.1  Integrase catalytic domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040915.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2EEN8
    Conserved Domains (1) summary
    cl15255
    Location:584 → 678
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
Heading Accession and Version

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