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F12F6.1 BEN domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178081, updated on 4-Jan-2025

Summary

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Official Symbol
F12F6.1
Official Full Name
BEN domain-containing protein
Primary source
WormBase:WBGene00008720
Locus tag
CELE_F12F6.1
See related
AllianceGenome:WB:WBGene00008720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See F12F6.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (11585224..11588321)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Rho-GAP domain-containing protein Neighboring gene ncRNA Neighboring gene Exostosin-1 homolog Neighboring gene ncRNA Neighboring gene EGF-like calcium-binding domain-containing protein Neighboring gene Trigger_C domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Abnormal cell migration protein 38

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C30F12.4 influences oogenesis, fat metabolism, and lifespan in C. elegans. Wang L, et al. Protein Cell, 2016 Oct. PMID 27638466, Free PMC Article
  2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  3. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
BEN domain-containing protein
NP_502182.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    11585224..11588321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069781.9 → NP_502182.2  BEN domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502182.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EE62
Nucleotide Protein
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