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sdz-27 SKN-1 Dependent Zygotic transcript [ Caenorhabditis elegans ]

Gene ID: 178027, updated on 2-Nov-2024

Summary

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Official Symbol
sdz-27
Official Full Name
SKN-1 Dependent Zygotic transcript
Primary source
WormBase:WBGene00011124
Locus tag
CELE_R07H5.4
See related
AllianceGenome:WB:WBGene00011124
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in gastrulation. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sdz-27 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (11187029..11188264)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Calponin-homology (CH) domain-containing protein;Choline/carnitine acyltransferase domain-containing protein Neighboring gene Peroxisomal membrane protein PEX14 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 Neighboring gene F-box associated domain-containing protein Neighboring gene Ovule protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overcoming redundancy: an RNAi enhancer screen for morphogenesis genes in Caenorhabditis elegans. Sawyer JM, et al. Genetics, 2011 Jul. PMID 21527776, Free PMC Article
  2. A pathway for phagosome maturation during engulfment of apoptotic cells. Kinchen JM, et al. Nat Cell Biol, 2008 May. PMID 18425118, Free PMC Article
  3. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Tan D, et al. Elife, 2016 Mar 8. PMID 26952210, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in gastrulation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SKN-1 Dependent Zygotic transcript
NP_502099.1
  • Product from WormBase gene class sdz;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    11187029..11188264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069698.5 → NP_502099.1  SKN-1 Dependent Zygotic transcript [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502099.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93932
Nucleotide Protein
Heading Accession and Version

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