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Y5F2A.4 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178004, updated on 4-Jan-2025

Summary

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Official Symbol
Y5F2A.4
Official Full Name
C2H2-type domain-containing protein
Primary source
WormBase:WBGene00012385
Locus tag
CELE_Y5F2A.4
See related
AllianceGenome:WB:WBGene00012385
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Is expressed in nerve ring and tail neurons. Orthologous to human ZNF28 (zinc finger protein 28). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y5F2A.4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
9
Sequence:
Chromosome: IV; NC_003282.8 (11076085..11078582, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Transthyretin-like family protein Neighboring gene pseudo Neighboring gene Ubiquitin-like modifier-activating enzyme ATG7 Neighboring gene Ubiquitin-conjugating enzyme E2 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C2H2-type domain-containing protein
NP_502063.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    11076085..11078582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069662.5 → NP_502063.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502063.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWL0
    Conserved Domains (2) summary
    sd00017
    Location:6 → 27
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:44 → 65
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
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