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praf-3 PRA1 family protein [ Caenorhabditis elegans ]

Gene ID: 177637, updated on 9-Dec-2024

Summary

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Official Symbol
praf-3
Official Full Name
PRA1 family protein
Primary source
WormBase:WBGene00017070
Locus tag
CELE_D2096.2
See related
AllianceGenome:WB:WBGene00017070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in membrane. Orthologous to human ARL6IP5 (ADP ribosylation factor like GTPase 6 interacting protein 5) and PRAF2 (PRA1 domain family member 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See praf-3 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (8379983..8381936)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene DDE-1 domain-containing protein;ELYS domain-containing protein;FA_FANCE domain-containing protein;Uncharacterized protein Neighboring gene Nucleosome assembly protein 1-like 1 Neighboring gene ncRNA Neighboring gene Neuropeptide-Like Protein Neighboring gene C6 domain-containing protein Neighboring gene GAR domain-containing protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PRA1 family protein
NP_001023104.1
  • Confirmed by transcript evidence
NP_001370621.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8379983..8381936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383143.1 → NP_001370621.1  PRA1 family protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4TTA9
    Conserved Domains (1) summary
    cl02137
    Location:8 → 55
    PRA1; PRA1 family protein

  2. NM_001027933.4 → NP_001023104.1  PRA1 family protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023104.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZJ7
    Conserved Domains (1) summary
    pfam03208
    Location:15 → 158
    PRA1; PRA1 family protein
Nucleotide Protein
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