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Y41D4A.4 Transmembrane 9 superfamily member [ Caenorhabditis elegans ]

Gene ID: 176983, updated on 2-Nov-2024

Summary

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Official Symbol
Y41D4A.4
Official Full Name
Transmembrane 9 superfamily member
Primary source
WormBase:WBGene00021506
Locus tag
CELE_Y41D4A.4
See related
AllianceGenome:WB:WBGene00021506
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in protein localization to membrane. Predicted to be active in membrane. Is expressed in several structures, including enteric muscle; head; hypodermis; pharynx; and reproductive system. Orthologous to human TM9SF3 (transmembrane 9 superfamily member 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y41D4A.4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Sequence:
Chromosome: IV; NC_003282.8 (1746001..1751459)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene Protein-tyrosine-phosphatase Neighboring gene Amidase domain-containing protein;Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial Neighboring gene BUB1 N-terminal domain-containing protein Neighboring gene F-box associated domain-containing protein Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in protein localization to membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transmembrane 9 superfamily member
NP_001368299.1
  • Confirmed by transcript evidence
NP_001368300.1
  • Confirmed by transcript evidence
NP_001368301.1
  • Confirmed by transcript evidence
NP_001368302.1
  • Confirmed by transcript evidence
NP_500130.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    1746001..1751459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067729.6 → NP_500130.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500130.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95Y24
    Conserved Domains (1) summary
    pfam02990
    Location:46 → 537
    EMP70; Endomembrane protein 70

  2. NM_001380061.2 → NP_001368299.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PBU4
    Conserved Domains (1) summary
    pfam02990
    Location:50 → 540
    EMP70; Endomembrane protein 70

  3. NM_001380062.2 → NP_001368302.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PRX8
    Conserved Domains (1) summary
    pfam02990
    Location:47 → 533
    EMP70; Endomembrane protein 70

  4. NM_001380063.1 → NP_001368300.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PC73
    Conserved Domains (1) summary
    pfam02990
    Location:2 → 469
    EMP70; Endomembrane protein 70

  5. NM_001380064.1 → NP_001368301.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PML6
Nucleotide Protein
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