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jtr-1 Protein JTB [ Caenorhabditis elegans ]

Gene ID: 176952, updated on 4-Jan-2025

Summary

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Official Symbol
jtr-1
Official Full Name
Protein JTB
Primary source
WormBase:WBGene00002180
Locus tag
CELE_Y77E11A.4
See related
AllianceGenome:WB:WBGene00002180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in mitotic cytokinesis. Predicted to be located in membrane. Predicted to be active in cytoplasm and midbody. Predicted to colocalize with centrosome and spindle. Orthologous to human JTB (jumping translocation breakpoint). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See jtr-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (1420929..1421790)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase subunit;TFIIS-type domain-containing protein Neighboring gene Dynein heavy chain;Dynein heavy chain 1, axonemal;PHD finger protein 10;SET domain-containing protein Neighboring gene ncRNA Neighboring gene PAN-3 domain-containing protein Neighboring gene PAN-3 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
  2. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in mitotic cytokinesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
colocalizes_with centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in midbody IBA
Inferred from Biological aspect of Ancestor
more info
  
colocalizes_with spindle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Protein JTB
NP_001370785.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    1420929..1421790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383040.1 → NP_001370785.1  Protein JTB [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N4B5
    Conserved Domains (1) summary
    pfam05439
    Location:58 → 167
    JTB; Jumping translocation breakpoint protein (JTB)
Nucleotide Protein
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