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perm-4 PERMeable eggshell [ Caenorhabditis elegans ]

Gene ID: 176932, updated on 2-Nov-2024

Summary

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Official Symbol
perm-4
Official Full Name
PERMeable eggshell
Primary source
WormBase:WBGene00016638
Locus tag
CELE_C44B12.5
See related
AllianceGenome:WB:WBGene00016638
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in oocyte. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See perm-4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (1121494..1125107, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene 7TM GPCR serpentine receptor class x (Srx) domain-containing protein Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Secreted protein Neighboring gene AAI domain-containing protein;Clip domain-containing protein;Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CBD-1 organizes two independent complexes required for eggshell vitelline layer formation and egg activation in C. elegans. González DP, et al. Dev Biol, 2018 Oct 15. PMID 30120927, Free PMC Article
  2. Integration of behavioural tests and transcriptome sequencing of C. elegans reveals how the nematode responds to peanut shell biochar amendment. Li J, et al. Sci Total Environ, 2020 Mar 10. PMID 31972909
  3. Genome-wide microarrray analysis reveals roles for the REF-1 family member HLH-29 in ferritin synthesis and peroxide stress response. Quach TK, et al. PLoS One, 2013. PMID 23533643, Free PMC Article
  4. Yolk-deprived Caenorhabditis elegans secure brood size at the expense of competitive fitness. Geens E, et al. Life Sci Alliance, 2023 Jun. PMID 37059473, Free PMC Article
  5. Galectin LEC-1 plays a defensive role against damage due to oxidative stress in Caenorhabditis elegans. Takeuchi T, et al. J Biochem, 2013 Nov. PMID 23935187

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
PERMeable eggshell
NP_500041.2
  • Product from WormBase gene class perm;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    1121494..1125107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067640.10 → NP_500041.2  PERMeable eggshell [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500041.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44144
    Conserved Domains (1) summary
    PRK14959
    Location:214 → 311
    PRK14959; DNA polymerase III subunits gamma and tau; Provisional
Nucleotide Protein
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