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rbm-7 RRM domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176710, updated on 9-Dec-2024

Summary

Official Symbol
rbm-7
Official Full Name
RRM domain-containing protein
Primary source
WormBase:WBGene00012558
Locus tag
CELE_Y37D8A.21
See related
AllianceGenome:WB:WBGene00012558
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable single-stranded RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to several human genes including RBM7 (RNA binding motif protein 7). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See rbm-7 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (12928370..12931867, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Transmembrane protein 33;Transmembrane protein 33 homolog Neighboring gene Small ribosomal subunit protein uS10m Neighboring gene Secreted protein Neighboring gene Ectopic P granules protein 3;Transmembrane protein 49 Neighboring gene Glutamate decarboxylase;Glutamate decarboxylase 1

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
RRM domain-containing protein
NP_499686.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    12928370..12931867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067285.7NP_499686.2  RRM domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499686.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWV4
    Conserved Domains (1) summary
    cl17169
    Location:1285
    RRM_SF; RNA recognition motif (RRM) superfamily