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trap-4 Translocon-associated protein subunit delta [ Caenorhabditis elegans ]

Gene ID: 176626, updated on 9-Dec-2024

Summary

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Official Symbol
trap-4
Official Full Name
Translocon-associated protein subunit delta
Primary source
WormBase:WBGene00013238
Locus tag
CELE_Y56A3A.21
See related
AllianceGenome:WB:WBGene00013238
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See trap-4 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (11920735..11921586)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Nuclear pore complex protein npp-16 Neighboring gene Zinc finger protein 593 homolog Neighboring gene CCR4-NOT transcription complex subunit 7 Neighboring gene DUF1279 domain-containing protein Neighboring gene Nitrilase homolog Neighboring gene dolichol kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction. Kang J, et al. J Genet Genomics, 2020 Nov 20. PMID 33547005
  2. Yolk-deprived Caenorhabditis elegans secure brood size at the expense of competitive fitness. Geens E, et al. Life Sci Alliance, 2023 Jun. PMID 37059473, Free PMC Article
  3. Axon guidance genes identified in a large-scale RNAi screen using the RNAi-hypersensitive Caenorhabditis elegans strain nre-1(hd20) lin-15b(hd126). Schmitz C, et al. Proc Natl Acad Sci U S A, 2007 Jan 16. PMID 17213328, Free PMC Article
  4. Robust co-immunoprecipitation with mass spectrometry for Caenorhabditis elegans using solid-phase enhanced sample preparation. Baytek G, et al. Biotechniques, 2022 May. PMID 35297663
  5. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Translocon-associated protein subunit delta
NP_001370085.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    11920735..11921586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383006.2 → NP_001370085.1  Translocon-associated protein subunit delta [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U238
    Conserved Domains (1) summary
    pfam05404
    Location:4 → 158
    TRAP-delta; Translocon-associated protein, delta subunit precursor (TRAP-delta)
Nucleotide Protein
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