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H14A12.3 Protein rogdi homolog [ Caenorhabditis elegans ]

Gene ID: 176058, updated on 2-Nov-2024

Summary

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Official Symbol
H14A12.3
Official Full Name
Protein rogdi homolog
Primary source
WormBase:WBGene00019196
Locus tag
CELE_H14A12.3
See related
AllianceGenome:WB:WBGene00019196
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in nuclear envelope. Predicted to be part of RAVE complex. Human ortholog(s) of this gene implicated in Kohlschutter-Tonz syndrome. Orthologous to human ROGDI (rogdi atypical leucine zipper). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See H14A12.3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (7463797..7465244)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene T-box transcription factor mls-1 Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene ncRNA Neighboring gene putative fumarate hydratase, mitochondrial Neighboring gene tRNA-synt_2 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A global analysis of genetic interactions in Caenorhabditis elegans. Byrne AB, et al. J Biol, 2007. PMID 17897480, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of RAVE complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein rogdi homolog
NP_498641.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7463797..7465244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066240.6 → NP_498641.1  Protein rogdi homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498641.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O17213
    Conserved Domains (1) summary
    pfam10259
    Location:90 → 251
    Rogdi_lz; Rogdi leucine zipper containing protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O17213.2

Gene LinkOut

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