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zmp-6 Peptidase metallopeptidase domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176025, updated on 9-Dec-2024

Summary

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Official Symbol
zmp-6
Official Full Name
Peptidase metallopeptidase domain-containing protein
Primary source
WormBase:WBGene00020646
Locus tag
CELE_T21D11.1
See related
AllianceGenome:WB:WBGene00020646
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to be located in extracellular matrix. Is expressed in anchor cell. Human ortholog(s) of this gene implicated in artery disease (multiple); bone disease (multiple); ovarian carcinoma; and tooth disease (multiple). Orthologous to several human genes including MMP26 (matrix metallopeptidase 26). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See zmp-6 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (7245701..7247840, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene proline--tRNA ligase Neighboring gene C2H2-type domain-containing protein Neighboring gene Major sperm protein Neighboring gene Uncharacterized protein Neighboring gene Phosphatidylserine decarboxylase beta chain Neighboring gene Putative methyltransferase B0361.6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Adaptive F-Actin Polymerization and Localized ATP Production Drive Basement Membrane Invasion in the Absence of MMPs. Kelley LC, et al. Dev Cell, 2019 Feb 11. PMID 30686527, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metalloendopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in collagen catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Peptidase metallopeptidase domain-containing protein
NP_498599.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7245701..7247840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066198.7 → NP_498599.1  Peptidase metallopeptidase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498599.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECC4
    Conserved Domains (1) summary
    cd04278
    Location:48 → 205
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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