gpch-1 G patch domain-containing protein 1 homolog [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: gpch-1
Official Full Name: G patch domain-containing protein 1 homolog
Primary source: WormBase:WBGene00011109
Locus tag: CELE_R07E5.1
See related: AllianceGenome:WB:WBGene00011109
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be active in nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See gpch-1 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 5

Sequence:: Chromosome: III; NC_003281.10 (4408551..4412217)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

R07E5.1 (e-PCR)
- UniSTS:307853

R07E5.2 (e-PCR)
- UniSTS:321018

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: G patch domain-containing protein 1 homolog

NP_497893.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

4408551..4412217

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_065492.5 → NP_497893.1 G patch domain-containing protein 1 homolog [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_497893.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q21827

Conserved Domains (2) summary

pfam01585
Location:145 → 194

G-patch; G-patch domain

pfam07713
Location:27 → 111

DUF1604; Protein of unknown function (DUF1604)