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lir-3 Transcription factor lir-3 [ Caenorhabditis elegans ]

Gene ID: 174707, updated on 2-Nov-2024

Summary

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Official Symbol
lir-3
Official Full Name
Transcription factor lir-3
Primary source
WormBase:WBGene00003046
Locus tag
CELE_F37H8.1
See related
AllianceGenome:WB:WBGene00003046
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Is expressed in several structures, including body wall muscle quadrant; muscle cell; pharynx; spermatheca; and vulva. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lir-3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003280.10 (11183075..11184807, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Uncharacterized protein Neighboring gene HAD family phosphatase Neighboring gene Sidoreflexin Neighboring gene GILT-like protein F37H8.5 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of an RNA Polymerase III Regulator Linked to Disease-Associated Protein Aggregation. Sin O, et al. Mol Cell, 2017 Mar 16. PMID 28306505, Free PMC Article
  2. lir-2, lir-1 and lin-26 encode a new class of zinc-finger proteins and are organized in two overlapping operons both in Caenorhabditis elegans and in Caenorhabditis briggsae. Dufourcq P, et al. Genetics, 1999 May. PMID 10224256, Free PMC Article
  3. RNA interference can target pre-mRNA: consequences for gene expression in a Caenorhabditis elegans operon. Bosher JM, et al. Genetics, 1999 Nov. PMID 10545456, Free PMC Article
  4. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  5. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transcription factor lir-3
NP_496395.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    11183075..11184807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063994.7 → NP_496395.1  Transcription factor lir-3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496395.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O17862
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O17862.1

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