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cup-16 Uncharacterized protein [ Caenorhabditis elegans ]

Gene ID: 174393, updated on 4-Jan-2025

Summary

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Official Symbol
cup-16
Official Full Name
Uncharacterized protein
Primary source
WormBase:WBGene00007919
Locus tag
CELE_C34C6.7
See related
AllianceGenome:WB:WBGene00007919
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in endocytosis and lysosomal protein catabolic process. Predicted to be located in lysosome. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See cup-16 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (8707155..8708860)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Homeobox protein ceh-7 Neighboring gene TPR_REGION domain-containing protein Neighboring gene Serpentine receptor class gamma-15 Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulators of Lysosome Function and Dynamics in Caenorhabditis elegans. Gee K, et al. G3 (Bethesda), 2017 Mar 10. PMID 28122949, Free PMC Article
  2. Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes. Suriyalaksh M, et al. iScience, 2022 Jan 21. PMID 35036864, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in endocytosis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in lysosomal protein catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Uncharacterized protein
NP_001254181.1
  • Confirmed by transcript evidence
NP_001254182.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    8707155..8708860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001267252.2 → NP_001254181.1  Uncharacterized protein CELE_C34C6.7 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254181.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7WN88

  2. NM_001267253.3 → NP_001254182.1  Uncharacterized protein CELE_C34C6.7 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254182.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7WN89
Nucleotide Protein
Heading Accession and Version

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