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perm-1 Epimerase domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 174273, updated on 4-Jan-2025

Summary

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Official Symbol
perm-1
Official Full Name
Epimerase domain-containing protein
Primary source
WormBase:WBGene00011350
Locus tag
CELE_T01H3.4
See related
AllianceGenome:WB:WBGene00011350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See perm-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003280.10 (7880812..7882767)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase 21 kDa proteolipid subunit c'' Neighboring gene XH domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The extra-embryonic space and the local contour are crucial geometric constraints regulating cell arrangement. Seirin-Lee S, et al. Development, 2022 May 1. PMID 35552395, Free PMC Article
  2. Hierarchical assembly of the eggshell and permeability barrier in C. elegans. Olson SK, et al. J Cell Biol, 2012 Aug 20. PMID 22908315, Free PMC Article
  3. Microtubule binding by KNL-1 contributes to spindle checkpoint silencing at the kinetochore. Espeut J, et al. J Cell Biol, 2012 Feb 20. PMID 22331849, Free PMC Article
  4. Anillin forms linear structures and facilitates furrow ingression after septin and formin depletion. Lebedev M, et al. Cell Rep, 2023 Sep 26. PMID 37665665, Free PMC Article
  5. Apical PAR protein caps orient the mitotic spindle in C. elegans early embryos. Stolpner NJ, et al. Curr Biol, 2023 Oct 23. PMID 37729910, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Epimerase domain-containing protein
NP_495661.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    7880812..7882767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063260.8 → NP_495661.1  Epimerase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495661.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22090
    Conserved Domains (2) summary
    COG0451
    Location:61 → 213
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
    cl21454
    Location:116 → 213
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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