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EEED8.12 Putative RNA-binding protein EEED8.12 [ Caenorhabditis elegans ]

Gene ID: 173922, updated on 2-Nov-2024

Summary

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Official Symbol
EEED8.12
Official Full Name
Putative RNA-binding protein EEED8.12
Primary source
WormBase:WBGene00017140
Locus tag
CELE_EEED8.12
See related
AllianceGenome:WB:WBGene00017140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable poly(A) binding activity. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See EEED8.12 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003280.10 (5408260..5409024, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Putative RNA-binding protein EEED8.10 Neighboring gene putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 Neighboring gene C-type lectin domain-containing protein 141 Neighboring gene Putative RNA-binding protein EEED8.4 Neighboring gene FBA_2 domain-containing protein Neighboring gene Glutaredoxin domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(A) binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Putative RNA-binding protein EEED8.12
NP_495021.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5408260..5409024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062620.6 → NP_495021.1  Putative RNA-binding protein EEED8.12 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495021.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q09301
    Conserved Domains (2) summary
    COG0724
    Location:11 → 133
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12306
    Location:62 → 134
    RRM_II_PABPs; RNA recognition motif in type II polyadenylate-binding proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q09301.1

Gene LinkOut

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