Y25C1A.7 Protein YIPF;Yip1 domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: Y25C1A.7
Official Full Name: Protein YIPF;Yip1 domain-containing protein
Primary source: WormBase:WBGene00021294
Locus tag: CELE_Y25C1A.7
See related: AllianceGenome:WB:WBGene00021294
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable small GTPase binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF1 (Yip1 domain family member 1) and YIPF2 (Yip1 domain family member 2). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y25C1A.7 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 11

Sequence:: Chromosome: II; NC_003280.10 (3062541..3071062, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y25C1A.7a (e-PCR)
- UniSTS:320388

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables small GTPase binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Protein YIPF;Yip1 domain-containing protein

NP_001364684.1

Confirmed by transcript evidence

NP_001370341.1

Confirmed by transcript evidence

NP_494439.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

3062541..3071062 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001377743.1 → NP_001364684.1 Yip1 domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

H2KY99

Conserved Domains (1) summary

pfam04893
Location:104 → 256

Yip1; Yip1 domain
NM_062038.4 → NP_494439.1 Protein YIPF [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_494439.1

Status: REVIEWED

UniProtKB/TrEMBL

H2KY98
NM_001383807.2 → NP_001370341.1 Protein YIPF [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q2Z1N7

Conserved Domains (1) summary

pfam04893
Location:104 → 256

Yip1; Yip1 domain