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gldr-2 PAP-associated domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173373, updated on 2-Nov-2024

Summary

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Official Symbol
gldr-2
Official Full Name
PAP-associated domain-containing protein
Primary source
WormBase:WBGene00009284
Locus tag
CELE_F31C3.2
See related
AllianceGenome:WB:WBGene00009284
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable poly(A) RNA polymerase activity. Predicted to be involved in RNA 3'-end processing. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gldr-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
11
Sequence:
Chromosome: I; NC_003279.8 (15036009..15040537)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene TPT domain-containing protein Neighboring gene Acidic leucine-rich nuclear phosphoprotein 32-related protein 1 Neighboring gene Peptidyl-prolyl cis-trans isomerase 5 Neighboring gene FMP27/BLTP2/Hobbit GFWDK motif-containing RBG unit domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Zrt (ZRT), Irt- (IRT-) like Protein Transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A family of poly(U) polymerases. Kwak JE, et al. RNA, 2007 Jun. PMID 17449726, Free PMC Article
  2. LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans. Lehrbach NJ, et al. Nat Struct Mol Biol, 2009 Oct. PMID 19713957, Free PMC Article
  3. Synthetic lethal interactions identify phenotypic "interologs" of the spindle assembly checkpoint components. Tarailo M, et al. Genetics, 2007 Dec. PMID 18073444, Free PMC Article
  4. Screening by deep sequencing reveals mediators of microRNA tailing in C. elegans. Vieux KF, et al. Nucleic Acids Res, 2021 Nov 8. PMID 34586415, Free PMC Article
  5. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables poly(A) RNA polymerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
PAP-associated domain-containing protein
NP_001021433.1
  • Confirmed by transcript evidence
NP_001021434.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    15036009..15040537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026263.4 → NP_001021434.1  PAP-associated domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021434.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EFR3
    Conserved Domains (1) summary
    COG5260
    Location:483 → 799
    TRF4; DNA polymerase sigma [Replication, recombination and repair]

  2. NM_001026262.7 → NP_001021433.1  PAP-associated domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021433.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EFM8
    Conserved Domains (1) summary
    COG5260
    Location:480 → 796
    TRF4; DNA polymerase sigma [Replication, recombination and repair]
Nucleotide Protein
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