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CHC_T00000320001 hypothetical protein [ Chondrus crispus (carragheen) ]

Gene ID: 17327143, updated on 16-Nov-2023

Summary

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Gene symbol
CHC_T00000320001
Gene description
hypothetical protein
Locus tag
CHC_T00000320001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chondrus crispus (strain: Stackhouse)
Lineage
Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales; Gigartinaceae; Chondrus
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Genomic context

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Exon count:
2

NW_005179400.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene UDP-glucose:glycoprotein glucosyltransferase, family GT24

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005179400.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Collén J, et al. Proc Natl Acad Sci U S A, 2013 Mar 26. PMID 23503846, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

3'UTR

  • Loc: c4525-4279

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005179400.1 Reference assembly

    Range
    4279..6010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005719367.1 → XP_005719424.1  unnamed protein product [Chondrus crispus]

    See identical proteins and their annotated locations for XP_005719424.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    R7QP30
    Conserved Domains (3) summary
    smart00717
    Location:158 → 206
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:158 → 203
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam11834
    Location:421 → 484
    KHA; KHA, dimerization domain of potassium ion channel
Nucleotide Protein
Heading Accession and Version

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