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Y48G10A.2 E3 ubiquitin-protein ligase UBR7;RING-type E3 ubiquitin transferase [ Caenorhabditis elegans ]

Gene ID: 173218, updated on 2-Nov-2024

Summary

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Official Symbol
Y48G10A.2
Official Full Name
E3 ubiquitin-protein ligase UBR7;RING-type E3 ubiquitin transferase
Primary source
WormBase:WBGene00013019
Locus tag
CELE_Y48G10A.2
See related
AllianceGenome:WB:WBGene00013019
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable transferase activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y48G10A.2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (13477152..13487368, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene INTegrator complex Subunit homolog Neighboring gene ncRNA Neighboring gene Protein NDRG3 Neighboring gene ncRNA Neighboring gene S-formylglutathione hydrolase Neighboring gene Protein soem-1 Neighboring gene Peroxisomal coenzyme A diphosphatase ndx-8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
  2. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase UBR7;RING-type E3 ubiquitin transferase
NP_001252171.1
  • Confirmed by transcript evidence
NP_001252172.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13477152..13487368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001265242.4 → NP_001252171.1  E3 ubiquitin-protein ligase UBR7 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001252171.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U284

  2. NM_001265243.4 → NP_001252172.1  RING-type E3 ubiquitin transferase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001252172.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KML5
Nucleotide Protein
Heading Accession and Version

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