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Y40B1B.7 Coiled-coil domain-containing protein 86 [ Caenorhabditis elegans ]

Gene ID: 173211, updated on 2-Nov-2024

Summary

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Official Symbol
Y40B1B.7
Official Full Name
Coiled-coil domain-containing protein 86
Primary source
WormBase:WBGene00012739
Locus tag
CELE_Y40B1B.7
See related
AllianceGenome:WB:WBGene00012739
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in nucleolus. Is expressed in anal depressor muscle; body wall musculature; hypodermis; nervous system; and pharynx. Orthologous to human CCDC86 (coiled-coil domain containing 86). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y40B1B.7 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (13426451..13428471, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Activin_recp domain-containing protein Neighboring gene F-box domain-containing protein Neighboring gene Solute carrier family 25 member 46 Neighboring gene ncRNA Neighboring gene Eukaryotic translation initiation factor 3 30 kDa subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Coiled-coil domain-containing protein 86
NP_493363.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13426451..13428471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060962.4 → NP_493363.1  Coiled-coil domain-containing protein 86 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493363.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWP4
    Conserved Domains (1) summary
    pfam03879
    Location:14 → 96
    Cgr1; Cgr1 family
Nucleotide Protein
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