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clec-15 C-type LECtin [ Caenorhabditis elegans ]

Gene ID: 173131, updated on 18-Sep-2024

Summary

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Official Symbol
clec-15
Official Full Name
C-type LECtin
Primary source
WormBase:WBGene00011584
Locus tag
CELE_T07D10.4
See related
AllianceGenome:WB:WBGene00011584
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See clec-15 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (12631185..12632555, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene pseudo Neighboring gene C-type LECtin Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
C-type LECtin
NP_493196.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    12631185..12632555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060795.1 → NP_493196.1  C-type LECtin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493196.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ED09
    Conserved Domains (2) summary
    smart00034
    Location:24 → 152
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cd00041
    Location:309 → 408
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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