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hmg-20 HMG box domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173124, updated on 4-Jan-2025

Summary

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Official Symbol
hmg-20
Official Full Name
HMG box domain-containing protein
Primary source
WormBase:WBGene00012209
Locus tag
CELE_W02D9.3
See related
AllianceGenome:WB:WBGene00012209
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Is expressed in body wall musculature; head neurons; seam cell; ventral nerve cord; and vulval muscle. Orthologous to several human genes including HMG20A (high mobility group 20A). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See hmg-20 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_003279.8 (12535314..12537671)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene DNA primase large subunit Neighboring gene Protein YIPF Neighboring gene Zf-3CxxC domain-containing protein Neighboring gene MATH domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation. Phillips CM, et al. Curr Biol, 2014 Apr 14. PMID 24684932, Free PMC Article
  2. WormGender - Open-Source Software for Automatic Caenorhabditis elegans Sex Ratio Measurement. Labocha MK, et al. PLoS One, 2015. PMID 26421844, Free PMC Article
  3. A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis. Ma X, et al. Nat Methods, 2021 Aug. PMID 34312566
  4. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
  5. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
HMG box domain-containing protein
NP_493178.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    12535314..12537671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060777.7 → NP_493178.1  HMG box domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493178.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVG8
    Conserved Domains (1) summary
    smart00398
    Location:126 → 193
    HMG; high mobility group
Nucleotide Protein
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