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popl-4 Ribonuclease P protein subunit p29 [ Caenorhabditis elegans ]

Gene ID: 173100, updated on 4-Jan-2025

Summary

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Official Symbol
popl-4
Official Full Name
Ribonuclease P protein subunit p29
Primary source
WormBase:WBGene00007603
Locus tag
CELE_C15C6.4
See related
AllianceGenome:WB:WBGene00007603
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ribonuclease P RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in cytoplasm. Predicted to be part of ribonuclease MRP complex and ribonuclease P complex. Orthologous to human POP4 (POP4 homolog, ribonuclease P/MRP subunit). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See popl-4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (12213106..12215198)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene PH domain-containing protein Neighboring gene YTH domain-containing protein Neighboring gene ncRNA Neighboring gene SKN-1 Dependent Zygotic transcript Neighboring gene Lactamase_B domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables ribonuclease P RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ribonuclease P RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA 5'-leader removal IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of ribonuclease MRP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonuclease MRP complex IEA
Inferred from Electronic Annotation
more info
  
part_of ribonuclease P complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ribonuclease P protein subunit p29
NP_493083.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    12213106..12215198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060682.7 → NP_493083.1  Ribonuclease P protein subunit p29 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493083.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVT1
    Conserved Domains (1) summary
    smart00538
    Location:88 → 178
    POP4; A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins
Nucleotide Protein
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