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Y52B11A.10 MI domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173006, updated on 4-Jan-2025

Summary

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Official Symbol
Y52B11A.10
Official Full Name
MI domain-containing protein
Primary source
WormBase:WBGene00013129
Locus tag
CELE_Y52B11A.10
See related
AllianceGenome:WB:WBGene00013129
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be active in nucleolus. Orthologous to human NOM1 (nucleolar protein with MIF4G domain 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y52B11A.10 in Genome Data Viewer
Location:
chromosome: I
Exon count:
16
Sequence:
Chromosome: I; NC_003279.8 (11039056..11052497)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene MLt-TeN (mlt-10) related Neighboring gene Phospholipase A2-like protein Y52B11A.8 Neighboring gene DNA/RNA-binding protein Kin17 WH-like domain-containing protein Neighboring gene pseudo Neighboring gene THAP-type domain-containing protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. Kolundzic E, et al. Dev Cell, 2018 Sep 10. PMID 30078731, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ribosomal small subunit biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MI domain-containing protein
NP_492861.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    11039056..11052497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060460.7 → NP_492861.1  MI domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492861.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U255
    Conserved Domains (3) summary
    pfam02847
    Location:628 → 734
    MA3; MA3 domain
    pfam02854
    Location:332 → 529
    MIF4G; MIF4G domain
    pfam04147
    Location:231 → 290
    Nop14; Nop14-like family
Nucleotide Protein
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