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nubp-1 Cytosolic Fe-S cluster assembly factor NUBP1 homolog [ Caenorhabditis elegans ]

Gene ID: 172868, updated on 2-Nov-2024

Summary

Official Symbol
nubp-1
Official Full Name
Cytosolic Fe-S cluster assembly factor NUBP1 homolog
Primary source
WormBase:WBGene00008664
Locus tag
CELE_F10G8.6
See related
AllianceGenome:WB:WBGene00008664
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable iron-sulfur cluster binding activity. Involved in regulation of non-motile cilium assembly. Predicted to be located in cilium and cytoplasm. Predicted to be active in cytosol. Is expressed in amphid neurons; inner labial neurons; outer labial neurons; and phasmid neurons. Orthologous to human NUBP1 (NUBP iron-sulfur cluster assembly factor 1, cytosolic). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See nubp-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (10046442..10047977)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ERCC1-like central domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene beta-ketoacyl-[acyl-carrier-protein] synthase I Neighboring gene PH domain-containing protein Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP-dependent FeS chaperone activity IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cell projection organization IEA
Inferred from Electronic Annotation
more info
 
involved_in iron-sulfur cluster assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in iron-sulfur cluster assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of non-motile cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
Cytosolic Fe-S cluster assembly factor NUBP1 homolog
NP_492653.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    10046442..10047977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060252.8NP_492653.2  Cytosolic Fe-S cluster assembly factor NUBP1 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492653.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93459
    Conserved Domains (2) summary
    COG0489
    Location:13282
    Mrp; Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster [Cell cycle control, cell division, chromosome partitioning]
    pfam10609
    Location:56308
    ParA; NUBPL iron-transfer P-loop NTPase