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F30A10.9 PIN domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 172780, updated on 9-Dec-2024

Summary

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Official Symbol
F30A10.9
Official Full Name
PIN domain-containing protein
Primary source
WormBase:WBGene00009266
Locus tag
CELE_F30A10.9
See related
AllianceGenome:WB:WBGene00009266
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human FCF1 (FCF1 rRNA-processing protein). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See F30A10.9 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (9504403..9505768, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-3-phosphatase Neighboring gene Kinase Neighboring gene ncRNA Neighboring gene Syntrophin-1 Neighboring gene Ubiquitin carboxyl-terminal hydrolase usp-48 Neighboring gene miscRNA Neighboring gene Tudor domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PIN domain-containing protein
NP_492523.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    9504403..9505768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060122.5 → NP_492523.1  PIN domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492523.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93638
    Conserved Domains (1) summary
    cd09864
    Location:57 → 185
    PIN_Fcf1-like; VapC-like PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs
Nucleotide Protein
Heading Accession and Version

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