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F27D4.4 Zinc finger CCCH domain-containing protein 15 homolog [ Caenorhabditis elegans ]

Gene ID: 172538, updated on 4-Jan-2025

Summary

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Official Symbol
F27D4.4
Official Full Name
Zinc finger CCCH domain-containing protein 15 homolog
Primary source
WormBase:WBGene00009189
Locus tag
CELE_F27D4.4
See related
AllianceGenome:WB:WBGene00009189
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in cytoplasmic translation. Predicted to be active in cytosol. Is expressed in hypodermis and intestine. Orthologous to human ZC3H15 (zinc finger CCCH-type containing 15). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See F27D4.4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (7725019..7727112)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Vesicle transport protein Neighboring gene ncRNA Neighboring gene 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) Neighboring gene Chromate transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ca(2+)/Calmodulin-binding proteins from the C. elegans proteome. Shen X, et al. Cell Calcium, 2008 May. PMID 17854888
  2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Zinc finger CCCH domain-containing protein 15 homolog
NP_001040656.2
  • Confirmed by transcript evidence
NP_001040657.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    7725019..7727112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047191.7 → NP_001040656.2  Zinc finger CCCH domain-containing protein 15 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040656.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93618
    Conserved Domains (3) summary
    smart00356
    Location:90 → 116
    ZnF_C3H1; zinc finger
    COG5252
    Location:4 → 320
    COG5252; Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
    pfam16543
    Location:218 → 301
    DFRP_C; DRG Family Regulatory Proteins, Tma46

  2. NM_001047192.3 → NP_001040657.1  Zinc finger CCCH domain-containing protein 15 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040657.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q1ZXT7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93618.3

Gene LinkOut

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