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tofu-5 Twenty One u-rna (21U-RNA) biogenesis Fouled Up [ Caenorhabditis elegans ]

Gene ID: 172439, updated on 2-Nov-2024

Summary

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Official Symbol
tofu-5
Official Full Name
Twenty One u-rna (21U-RNA) biogenesis Fouled Up
Primary source
WormBase:WBGene00012167
Locus tag
CELE_W01A8.5
See related
AllianceGenome:WB:WBGene00012167
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in germ cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tofu-5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (7069440..7070665)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ZP domain-containing protein Neighboring gene ncRNA Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 Neighboring gene Peptidase M14 carboxypeptidase A domain-containing protein Neighboring gene ncRNA Neighboring gene Tyrosine-protein kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis. Goh WS, et al. Genes Dev, 2014 Apr 1. PMID 24696458, Free PMC Article
  2. The SNAPc complex mediates starvation-induced trans-splicing in Caenorhabditis elegans. Hou X, et al. J Genet Genomics, 2022 Oct. PMID 35283340
  3. A chromodomain protein mediates heterochromatin-directed piRNA expression. Huang X, et al. Proc Natl Acad Sci U S A, 2021 Jul 6. PMID 34187893, Free PMC Article
  4. The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans. Weng C, et al. Genes Dev, 2019 Jan 1. PMID 30567997, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Tofu-5 is required for the biogenesis of 21U-RNAs and is likely involved in the transcription of capped pre-21U precursor RNAs.
    Title: A genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Twenty One u-rna (21U-RNA) biogenesis Fouled Up
NP_492002.1
  • Product from WormBase gene class tofu;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    7069440..7070665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059601.9 → NP_492002.1  Twenty One u-rna (21U-RNA) biogenesis Fouled Up [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492002.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23096
Nucleotide Protein
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