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nmtn-1 CTLH domain-containing protein;WD_REPEATS_REGION domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 172355, updated on 4-Jan-2025

Summary

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Official Symbol
nmtn-1
Official Full Name
CTLH domain-containing protein;WD_REPEATS_REGION domain-containing protein
Primary source
WormBase:WBGene00019434
Locus tag
CELE_K06A5.8
See related
AllianceGenome:WB:WBGene00019434
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human WDR47 (WD repeat domain 47). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See nmtn-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
18
Sequence:
Chromosome: I; NC_003279.8 (6473860..6488977, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Major sperm protein Neighboring gene DUF389 domain membrane protein Neighboring gene M-phase inducer phosphatase cdc-25.1 Neighboring gene Chromo domain-containing protein Neighboring gene STAS domain-containing protein Neighboring gene ncRNA Neighboring gene Lariat debranching enzyme Neighboring gene Mediator of RNA polymerase II transcription subunit 18 Neighboring gene Unconventional prefoldin RPB5 interactor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nemitin, a novel Map8/Map1s interacting protein with Wd40 repeats. Wang W, et al. PLoS One, 2012. PMID 22523538, Free PMC Article
  2. A WDR47 homolog facilitates ciliogenesis by modulating intraflagellar transport. Song CX, et al. J Cell Sci, 2022 Dec 15. PMID 36453135
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
CTLH domain-containing protein;WD_REPEATS_REGION domain-containing protein
NP_001370607.1
  • Confirmed by transcript evidence
NP_491864.2
  • Confirmed by transcript evidence
NP_491865.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6473860..6488977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383257.1 → NP_001370607.1  WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZG8
    Conserved Domains (2) summary
    sd00039
    Location:363 → 412
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:411 → 559
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. NM_059463.8 → NP_491864.2  CTLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491864.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZG7
    Conserved Domains (3) summary
    smart00668
    Location:62 → 118
    CTLH; C-terminal to LisH motif
    cd00200
    Location:679 → 939
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:683 → 724
    7WD40; WD40 repeat [structural motif]

  3. NM_059464.5 → NP_491865.2  CTLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491865.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95X65
    Conserved Domains (3) summary
    smart00668
    Location:62 → 118
    CTLH; C-terminal to LisH motif
    sd00039
    Location:629 → 678
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:677 → 861
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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