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spch-2 SPerm CHromatin enriched [ Caenorhabditis elegans ]

Gene ID: 172325, updated on 4-Jan-2025

Summary

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Official Symbol
spch-2
Official Full Name
SPerm CHromatin enriched
Primary source
WormBase:WBGene00015689
Locus tag
CELE_C10G11.9
See related
AllianceGenome:WB:WBGene00015689
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in chromatin. Is expressed in sperm. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See spch-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003279.8 (6274530..6275291, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Potassium channel domain-containing protein Neighboring gene AAA+ ATPase domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SKIP and BIR-1/Survivin have potential to integrate proteome status with gene expression. Kostrouch D, et al. J Proteomics, 2014 Oct 14. PMID 25088050
  2. Sperm chromatin proteomics identifies evolutionarily conserved fertility factors. Chu DS, et al. Nature, 2006 Sep 7. PMID 16943775, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SPerm CHromatin enriched
NP_491812.1
  • Product from WormBase gene class spch;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6274530..6275291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059411.5 → NP_491812.1  SPerm CHromatin enriched [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491812.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    P91026
Nucleotide Protein
Heading Accession and Version

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