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trpp-8 Trafficking protein particle complex subunit 8 [ Caenorhabditis elegans ]

Gene ID: 172217, updated on 2-Nov-2024

Summary

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Official Symbol
trpp-8
Official Full Name
Trafficking protein particle complex subunit 8
Primary source
WormBase:WBGene00018512
Locus tag
CELE_F46F11.9
See related
AllianceGenome:WB:WBGene00018512
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of TRAPPIII protein complex. Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See trpp-8 in Genome Data Viewer
Location:
chromosome: I
Exon count:
10
Sequence:
Chromosome: I; NC_003279.8 (5610374..5616402, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin-like protein 5 Neighboring gene putative V-type proton ATPase subunit G Neighboring gene ncRNA Neighboring gene F-box domain-containing protein Neighboring gene CSD domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans bicd-1, homolog of the Drosophila dynein accessory factor Bicaudal D, regulates the branching of PVD sensory neuron dendrites. Aguirre-Chen C, et al. Development, 2011 Feb. PMID 21205795, Free PMC Article
  2. Broadly conserved roles of TMEM131 family proteins in intracellular collagen assembly and secretory cargo trafficking. Zhang Z, et al. Sci Adv, 2020 Feb. PMID 32095531, Free PMC Article
  3. The conserved transmembrane protein TMEM-39 coordinates with COPII to promote collagen secretion and regulate ER stress response. Zhang Z, et al. PLoS Genet, 2021 Feb. PMID 33524011, Free PMC Article
  4. Axon guidance genes identified in a large-scale RNAi screen using the RNAi-hypersensitive Caenorhabditis elegans strain nre-1(hd20) lin-15b(hd126). Schmitz C, et al. Proc Natl Acad Sci U S A, 2007 Jan 16. PMID 17213328, Free PMC Article
  5. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of TRAPPIII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Trafficking protein particle complex subunit 8
NP_491642.2
  • Confirmed by transcript evidence
NP_491643.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    5610374..5616402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059242.6 → NP_491643.2  Trafficking protein particle complex subunit 8 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491643.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L043
    Conserved Domains (1) summary
    pfam12739
    Location:128 → 556
    TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit

  2. NM_059241.7 → NP_491642.2  Trafficking protein particle complex subunit 8 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491642.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9BI63
    Conserved Domains (1) summary
    pfam12739
    Location:128 → 558
    TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit
Nucleotide Protein
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Gene LinkOut

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