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Y54E10A.6 B3/B4 tRNA-binding domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 171890, updated on 2-Nov-2024

Summary

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Official Symbol
Y54E10A.6
Official Full Name
B3/B4 tRNA-binding domain-containing protein
Primary source
WormBase:WBGene00021828
Locus tag
CELE_Y54E10A.6
See related
AllianceGenome:WB:WBGene00021828
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity. Predicted to contribute to phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Orthologous to human LRRC47 (leucine rich repeat containing 47). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y54E10A.6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (3163688..3168057)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene RNA helicase Neighboring gene ncRNA Neighboring gene Large ribosomal subunit protein bL17m Neighboring gene Dynactin subunit 6 Neighboring gene Ribosome production factor 2 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
contributes_to phenylalanine-tRNA ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phenylalanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in phenylalanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
B3/B4 tRNA-binding domain-containing protein
NP_001380012.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    3163688..3168057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001393182.1 → NP_001380012.1  B3/B4 tRNA-binding domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N3F2
    Conserved Domains (3) summary
    PLN02265
    Location:266 → 495
    PLN02265; probable phenylalanyl-tRNA synthetase beta chain
    COG4886
    Location:45 → 219
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:47 → 69
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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