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Vmn1r30 vomeronasal 1 receptor 30 [ Mus musculus (house mouse) ]

Gene ID: 171195, updated on 27-Nov-2024

Summary

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Official Symbol
Vmn1r30provided by MGI
Official Full Name
vomeronasal 1 receptor 30provided by MGI
Primary source
MGI:MGI:2159458
See related
Ensembl:ENSMUSG00000095670 AllianceGenome:MGI:2159458
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rc9; V1rc22
Summary
Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Vmn1r30 in Genome Data Viewer
Location:
6 B3; 6 27.82 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (58411833..58420609, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (58434848..58443624, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 29 Neighboring gene STARR-seq mESC enhancer starr_16017 Neighboring gene vomeronasal 1 receptor, pseudogene 20 Neighboring gene vomeronasal 1 receptor, pseudogene 21 Neighboring gene vomeronasal 1 receptor 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Sequence diversity and genomic organization of vomeronasal receptor genes in the mouse. Del Punta K, et al. Genome Res, 2000 Dec. PMID 11116090, Free PMC Article
  2. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
  3. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
  4. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables pheromone receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables signaling receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within sensory perception of chemical stimulus TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
vomeronasal 1 receptor 30
Names
vomernasal 1 receptor Vmn1r30
vomeronasal 1 receptor, C22
vomeronasal 1 receptor, C9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134177.1 → NP_598938.1  vomeronasal 1 receptor 30

    See identical proteins and their annotated locations for NP_598938.1

    Status: PROVISIONAL

    Source sequence(s)
    AY065478
    Consensus CDS
    CCDS51797.1
    UniProtKB/TrEMBL
    G3X9G3, Q8R2D2, Q9EQ35
    Related
    ENSMUSP00000087336.4, ENSMUST00000078890.5
    Conserved Domains (2) summary
    cd14964
    Location:4 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:2 → 292
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    58411833..58420609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321423.1 → XP_017176912.1  vomeronasal 1 receptor 30 isoform X1

    UniProtKB/TrEMBL
    G3X9G3, Q8R2D2, Q9EQ35
    Related
    ENSMUSP00000153952.2, ENSMUST00000226334.2
    Conserved Domains (2) summary
    cd14964
    Location:4 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:2 → 292
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  2. XM_017321424.1 → XP_017176913.1  vomeronasal 1 receptor 30 isoform X1

    UniProtKB/TrEMBL
    G3X9G3, Q8R2D2, Q9EQ35
    Related
    ENSMUSP00000153898.2, ENSMUST00000228577.2
    Conserved Domains (2) summary
    cd14964
    Location:4 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:2 → 292
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein Strain
Heading Accession and Version

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