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Hdgfl1 HDGF like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 171074, updated on 4-Jan-2025

Summary

Official Symbol
Hdgfl1provided by RGD
Official Full Name
HDGF like 1provided by RGD
Primary source
RGD:621012
See related
AllianceGenome:RGD:621012
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Pwwp1; Hdgfrp1
Summary
Orthologous to human HDGFL1 (HDGF like 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See Hdgfl1 in Genome Data Viewer
Location:
17p11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (38636053..38638049)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (38207906..38209902)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (40170522..40172518)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L19, pseudogene 10 Neighboring gene thymine-DNA glycosylase, pseudogene 3 Neighboring gene uncharacterized LOC134482854 Neighboring gene pyruvate kinase M1/2, pseudogene 12

Genomic regions, transcripts, and products

General protein information

Preferred Names
hepatoma-derived growth factor-like protein 1
Names
hepatoma derived growth factor-like 1
hepatoma-derived growth factor, related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133549.3NP_598233.2  hepatoma-derived growth factor-like protein 1

    See identical proteins and their annotated locations for NP_598233.2

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    Q5RKK8, Q7TNX5
    Conserved Domains (1) summary
    cd05834
    Location:885
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    38636053..38638049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)