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lncRNA:CR43900 long non-coding RNA:CR43900 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 14462580, updated on 11-Sep-2024

Summary

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Official Symbol
lncRNA:CR43900provided by FlyBase
Official Full Name
long non-coding RNA:CR43900provided by FlyBase
Primary source
FLYBASE:FBgn0264501
Locus tag
Dmel_CR43900
See related
AllianceGenome:FB:FBgn0264501
Gene type
ncRNA
RNA name
lncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR43900; Dmel\CR43900
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Genomic context

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See lncRNA:CR43900 in Genome Data Viewer
Location:
48F1-48F1; 2-66 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (12259409..12260813)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (8146914..8148318)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Vacuolar H[+] ATPase 36kD subunit 2 Neighboring gene Calmodulin Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45271 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive Identification and Alternative Splicing of Microexons in Drosophila. Pang TL, et al. Front Genet, 2021. PMID 33859668, Free PMC Article
  2. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  3. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR43900-RA; Dmel\lncRNA:CR43900-RA; CR43900-RA; Dmel\CR43900-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    12259409..12260813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_073871.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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