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lncRNA:CR42651 long non-coding RNA::CR42651 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 14462440, updated on 9-Dec-2024

Summary

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Official Symbol
lncRNA:CR42651provided by FlyBase
Official Full Name
long non-coding RNA::CR42651provided by FlyBase
Primary source
FLYBASE:FBgn0261503
Locus tag
Dmel_CR42651
See related
AllianceGenome:FB:FBgn0261503
Gene type
ncRNA
RNA name
lncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG42651; CR42651; Dmel\CR42651; pri-mir-10
Summary
Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See lncRNA:CR42651 in Genome Data Viewer
Location:
84A5-84A5; 3-48 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (6808796..6816379, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2634518..2642050, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA::CR42721 Neighboring gene long non-coding RNA:CR43435 Neighboring gene Deformed Neighboring gene long non-coding RNA:CR45915 Neighboring gene mir-10 stem loop Neighboring gene transfer RNA:Lysine-TTT 2-1 Neighboring gene Signal recognition particle 7SL RNA CR42652

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Three Drosophila Hox complex microRNAs do not have major effects on expression of evolutionarily conserved Hox gene targets during embryogenesis. Lemons D, et al. PLoS One, 2012. PMID 22393361, Free PMC Article
  2. Tis11 mediated mRNA decay promotes the reacquisition of Drosophila intestinal stem cell quiescence. McClelland L, et al. Dev Biol, 2017 Jun 1. PMID 28445691, Free PMC Article
  3. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
  4. Comparative Expression Dynamics of Intergenic Long Noncoding RNAs in the Genus Drosophila. Nyberg KG, et al. Genome Biol Evol, 2016 Jun 27. PMID 27189981, Free PMC Article
  5. The Drosophila embryo at single-cell transcriptome resolution. Karaiskos N, et al. Science, 2017 Oct 13. PMID 28860209

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR42651-RB; Dmel\lncRNA:CR42651-RB; CR42651-RB; Dmel\CR42651-RB

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    6808796..6816379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_073987.2 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Molecular Biology Databases
Research Materials