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Fat1 FAT atypical cadherin 1 [ Mus musculus (house mouse) ]

Gene ID: 14107, updated on 27-Nov-2024

Summary

Official Symbol
Fat1provided by MGI
Official Full Name
FAT atypical cadherin 1provided by MGI
Primary source
MGI:MGI:109168
See related
Ensembl:ENSMUSG00000070047 AllianceGenome:MGI:109168
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fath; mFat1; 2310038E12Rik
Summary
Involved in epithelial cell morphogenesis; establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis; and lens development in camera-type eye. Acts upstream of or within actin filament organization; cell-cell adhesion; and establishment or maintenance of cell polarity. Located in cell junction; filopodium; and lamellipodium. Is active in apical plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; embryo ectoderm; embryo mesenchyme; and sensory organ. Used to study facioscapulohumeral muscular dystrophy and nephrotic syndrome. Human ortholog(s) of this gene implicated in colorectal cancer; esophagus squamous cell carcinoma; lung non-small cell carcinoma; lung small cell carcinoma; and oral squamous cell carcinoma. Orthologous to human FAT1 (FAT atypical cadherin 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in limb E14.5 (RPKM 20.3), colon adult (RPKM 15.5) and 24 other tissues See more
Orthologs
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Genomic context

See Fat1 in Genome Data Viewer
Location:
8 B1.1; 8 24.81 cM
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (45386137..45505294)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (44933100..45052257)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene dynein light chain 1, cytoplasmic-like Neighboring gene STARR-seq mESC enhancer starr_21340 Neighboring gene STARR-seq mESC enhancer starr_21342 Neighboring gene STARR-seq mESC enhancer starr_21343 Neighboring gene STARR-seq mESC enhancer starr_21344 Neighboring gene STARR-seq mESC enhancer starr_21345 Neighboring gene STARR-seq mESC enhancer starr_21346 Neighboring gene STARR-seq mESC enhancer starr_21347 Neighboring gene STARR-seq mESC enhancer starr_21348 Neighboring gene predicted gene, 30397 Neighboring gene STARR-seq mESC enhancer starr_21350 Neighboring gene STARR-seq mESC enhancer starr_21351 Neighboring gene STARR-seq mESC enhancer starr_21352 Neighboring gene STARR-seq mESC enhancer starr_21353 Neighboring gene STARR-seq mESC enhancer starr_21356 Neighboring gene STARR-seq mESC enhancer starr_21359 Neighboring gene STARR-seq mESC enhancer starr_21360 Neighboring gene STARR-seq mESC enhancer starr_21361 Neighboring gene predicted gene 9908 Neighboring gene STARR-seq mESC enhancer starr_21364 Neighboring gene cDNA sequence AY512931 Neighboring gene melatonin receptor 1A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in apical plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell junction IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell-cell junction ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in filopodium IDA
Inferred from Direct Assay
more info
PubMed 
located_in lamellipodium IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protocadherin Fat 1
Names
FAT tumor suppressor homolog 1
fat 1 cadherin

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081286.3NP_001074755.2  protocadherin Fat 1 precursor

    See identical proteins and their annotated locations for NP_001074755.2

    Status: VALIDATED

    Source sequence(s)
    AC119214, AC158352
    Consensus CDS
    CCDS52547.1
    UniProtKB/TrEMBL
    F2Z4A3, Q9QXA3
    Related
    ENSMUSP00000140596.2, ENSMUST00000191428.7
    Conserved Domains (5) summary
    cd11304
    Location:32363333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38563987
    LamG; Laminin G domain
    cd00054
    Location:41294165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:40954125
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    45386137..45505294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509267.4XP_006509330.1  protocadherin Fat 1 isoform X1

    See identical proteins and their annotated locations for XP_006509330.1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  2. XM_006509270.4XP_006509333.1  protocadherin Fat 1 isoform X2

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  3. XM_006509272.4XP_006509335.1  protocadherin Fat 1 isoform X4

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  4. XM_006509273.4XP_006509336.1  protocadherin Fat 1 isoform X5

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (4) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41154151
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  5. XM_036153756.1XP_036009649.1  protocadherin Fat 1 isoform X7

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (4) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41154151
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  6. XM_017312564.2XP_017168053.1  protocadherin Fat 1 isoform X8

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (4) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41154151
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  7. XM_006509271.4XP_006509334.1  protocadherin Fat 1 isoform X3

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32363333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38563987
    LamG; Laminin G domain
    cd00054
    Location:41294165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:40954125
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  8. XM_006509277.4XP_006509340.1  protocadherin Fat 1 isoform X10

    UniProtKB/TrEMBL
    A0A087WRT4, Q9QXA3
    Related
    ENSMUSP00000140765.3, ENSMUST00000189017.8
    Conserved Domains (5) summary
    cd11304
    Location:32363333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38563987
    LamG; Laminin G domain
    cd00054
    Location:41294165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:40954125
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  9. XM_006509276.5XP_006509339.1  protocadherin Fat 1 isoform X9

    See identical proteins and their annotated locations for XP_006509339.1

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  10. XM_030243288.2XP_030099148.1  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  11. XM_011242173.4XP_011240475.1  protocadherin Fat 1 isoform X1

    See identical proteins and their annotated locations for XP_011240475.1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  12. XM_036153754.1XP_036009647.1  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  13. XM_030243287.2XP_030099147.1  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  14. XM_006509268.5XP_006509331.1  protocadherin Fat 1 isoform X1

    See identical proteins and their annotated locations for XP_006509331.1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Related
    ENSMUSP00000149194.2, ENSMUST00000215588.2
    Conserved Domains (5) summary
    cd11304
    Location:32593356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38794010
    LamG; Laminin G domain
    cd00054
    Location:41524188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:41184148
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain
  15. XM_036153755.1XP_036009648.1  protocadherin Fat 1 isoform X3

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:32363333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:38563987
    LamG; Laminin G domain
    cd00054
    Location:41294165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:40954125
    EGF; EGF-like domain
    cl29226
    Location:278357
    Cadherin; Cadherin domain

RNA

  1. XR_001778405.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_010179.1: Suppressed sequence

    Description
    NM_010179.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.